Publications

Google scholar

  • Farr AD, Vasileiou C, Lind PA, Rainey PB. (2025) An extreme mutational hotspot in nlpD depends on transcriptional induction of rpoS. PLoS Genet. 2025 Jan 31;21(1):e1011572
  • Isaksson H, Lind PA, Libby E.  (2025) Adaptive evolutionary trajectories in complexity: Transitions between unicellularity and facultative differentiated multicellularity. Proc Natl Acad Sci U S A. 122 (4) e2411692122
  • Solowiej-Wedderburn J, Pentz JT, Lizana L, Schröder B, Lind PA, Libby E. (2024) Competition and cooperation: The plasticity of bacteria interactions across environments. bioRxiv 
  • Pentz JT, Biswas A, Alsaed B, Lind PA. (2024) Extending evolutionary forecasts across bacterial species. Proceedings B 2024 Dec;291(2036):20242312
  • Chavhan Y, Dey S, Lind PA. (2023) Bacteria evolve macroscopic multicellularity by the genetic assimilation of phenotypically plastic cell clustering. Nature Communications 14, 3555 
  • Sun TA, Lind PA. (2023) Distribution of mutation rates challenges evolutionary predictability. Microbiology 169(5): 001323
  • Wortel MT, Deepa D, Bailey SF, Bank C, Bisschop K, Blankers T, Cairns J, Colizzi ES, Cusseddu D, Desai MM, Egas M, Ellers J, Groot AT, Hackel DG, Johnson ML, Kraaijeveld K, Krug J, Laan L, Lässig M, Lind PA, Meijer J, Noble LM, Okasha S, Rainey PB, Rozen DE, Shitut S, Tans SJ, Tenaillon O, Teotonio H, de Visser JAGM, Visser ME, Vroomans RMA, Werner GDA, Wertheim B, Pennings PS. (2022) Towards evolutionary predictions: Current promises and challenges. Evolutionary Applications, 16(1): 3-21
  • Pentz  JT, Lind PA. (2021). Evolutionary forecasting of phenotypic and genetic outcomes of experimental evolution in Pseudomonas protegens Pf-5. PLoS Genetics 2021 Aug; 17(8): e1009722.
  • Libby E, Lind PA. (2019) Probabilistic models for predicting mutational routes to new adaptive phenotypes. Bioprotocol Vol. 9, (20).
  • Lind PA. (2019). Repeatability and predictability in experimental evolution. Book chapter in Evolution, Origin of Life, Concepts and Methods, pp 57-83 ed. Pierre Pontarotti.
  • Lind PA#, Libby E, Herzog J, Rainey PB. (2019) Predicting mutational routes to new adaptive phenotypes, eLife  8:ee38822 (# corresponding author)
  • Rainey PB, Remigi P, Farr AD, Lind PA. (2017) Darwin was right: where now for experimental evolution? Current Opinion in Genetics & Development; 47:102-109.
  • Lind PA#, Farr AD, Rainey PB. (2017) Evolutionary convergence in experimental Pseudomonas populations. The ISME Journal Mar;11(3):589-600. (# corresponding author)
  • Lind PA, Arvidsson L, Berg OG, Andersson DI. (2017) Variation in mutational robustness between different proteins and the predictability of fitness effects. Molecular Biology and Evolution 34(2):408-418.
  • Lind PA#, Farr AD, Rainey PB. (2015) Experimental evolution reveals hidden diversity in evolutionary pathways. eLife 2015;4:e07074 (# corresponding author)
  • Knöppel A*, Lind PA*, Lustig U, Näsvall J, Andersson DI. (2014) Minor fitness costs in an experimental model of horizontal gene transfer in bacteria. Molecular Biology and Evolution 31(5):1220-7. (*Shared first authorship) 
  • Lind PA, Andersson DI. (2013) Fitness costs of synonymous mutations in the rpsT gene can be compensated by restoring mRNA base pairing. PLoS One 8(5):e63373.
  • Lind PA, Berg OG, Andersson DI. (2010) Mutational robustness of ribosomal protein genes. Science 330 (6005); 825-827.
  • Lind PA, Tobin C, Berg OG, Kurland CG, Andersson DI. (2010) Compensatory gene amplification restores fitness after inter-species gene replacements. Molecular Microbiology 75(5):1078-89.
  • Lind PA, Andersson DI. (2008) Whole-genome mutational biases in bacteria. Proc Natl Acad Sci U S A. 105(46):17878-83.